Trainer’s Registry

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NameInstitutionCountryTraining topicsTraining frequencyContact infoCommunities/FundersTraining tagsLinks
Jason WilliamsCold Spring Harbor LaboratoryUSABioinformatics, Molecular BiologyA few times a yearwilliams@cshl.edu, twitter: @JasonWilliamsNYThe Carpentries – Software, Data, Library Carpentry, CyVerse, NIH Data CommonsMolecular cloning, R, Python, Jupyter, Docker, cloud computing, RNA-Seq, education and assessmenthttp://jasonjwilliamsny.github.io/profile/
Ben LangmeadJohns Hopkins UniversityUSABioinformatics, DNA Sequencing, GenomicsOnce a year or lessben.langmead@gmail.comISCB – International Society for Computational Biology, NIH – National Institutes of Health, NSF – National Science Foundationalgorithms, data structures, programminghttp://www.langmead-lab.org/teaching-materials
Amina EchchikiSwiss Institute of Bioinformatics / University of LausanneSwitzerlandBioinformatics, DNA Sequencing, General Life Sciences, GenomicsA few times a yeara.echchiki@gmail.com; twitter: @aechchikELIXIR, SIB Trainingbioinformatics, genome assembly, long reads sequencing
Vicky SchneiderAmazon and University of MelbourneUnited KingdomBioinformatics, Ecology, General Life Sciences, Scientific writing, Evolutionary biologistA few times a yearMvschneiderg@gmail.comGalaxyBioinformatics, population genetics, ecology and evolution of biodiversity, introduction to ML
Nick WongMonash universityAustraliaBioinformatics, GenomicsA few times a yearNick.wong@monash.eduABACBS – Australian Bioinformatics and Computational Biology SocietyR, genomics, RNA-Seqhttps://github.com/MonashBioinformaticsPlatform
Ming TangHarvardUSABioinformatics, DNA Sequencing, GenomicsA few times a yeartangming2005@gmail.comNIH – National Institutes of HealthChIP-Seq, single cell RNA-Seq, unix shell, R, snakemakehttps://divingintogeneticsandgenomics.rbind.io/
Ben HarrisCold Spring Harbor LaboratoryUSABioinformaticsOnce a year or lessbharris@cshl.edu @b_harris_12python
Alex WhanCSIROAustraliaBioinformatics, GenomicsA few times a year@alexwhanABACBS – Australian Bioinformatics and Computational Biology Society, The Carpentries – Software, Data, Library CarpentryR, git
Noah FahlgrenDonald Danforth Plant Science CenterUSABioinformatics, Genomics, Plant biology, PhenotypingA few times a yearnfahlgren@danforthcenter.org, Twitter: @NoahFahlgrenASPB – American Society of Plant Biology, ISCB – International Society for Computational Biology, NSF – National Science Foundationimage analysis, statistics, bioinformaticshttps://www.danforthcenter.org/scientists-research/principal-investigators/noah-fahlgren
Peter van HeusdenSouth African National Bioinformatics Institute, University of the Western CapeSouth AfricaBioinformaticsA few times a yearpvanheusGalaxy, ASBCB – African Society for Bioinformatics and Computational Biologypython, microbial bioinformatics, galaxy
Radhika KhetaniHarvard UniversityUSABioinformatics, DNA Sequencing, GenomicsOnce a month or morekhetani.r@gmail.com, rs_khetaniThe Carpentries – Software, Data, Library Carpentry, Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, H3ABioNet – Pan African Bioinformatics networkR, HPC, NGS, Data managementhttps://hbctraining.github.io/main
Fotis E. PsomopoulosInstitute of Applied Biosciences (INAB/CERTH)GreeceBioinformatics, Biology mathematics/statisticsA few times a year@fopsomThe Carpentries – Software, Data, Library Carpentry, ELIXIR, ISCB – International Society for Computational BiologyNGS Data Analysis, R (Intro / Advanced), Machine Learning for Life Sciences, Reproducibility approaches (Docker, CWL)https://fpsom.github.io
Sandra PorterAustin Community College, Shoreline Community College, Digital World Biology LLCUSABiochemistry, Bioinformatics, Genomics, Microbiology, I have also taught Genetics, Immunology, and lots of biotech lab courses – cloning, sequencing, tissue culture, immunochemistry, protein purification, media and solution prep, GMPsA few times a yeardigitalbio@gmail.com @digitalbioASM – American Soceity for Microbiology, NSF – National Science Foundation, Bio-Link, NABT (National Association of Biology Teachers)Bioinformatics for biologists, and Bioinformatics for biology instructorshttps://DWBio.com
Mauricio BarrientosKarolinska InstitutetSwedenBioinformatics, GenomicsOnce a year or lessmauricio.barrientos@ki.se
Sonika TyagiMonash UniversityAustraliaBioinformatics, Biology mathematics/statistics, DNA Sequencing, General Life Sciences, Genomics, Health/medical sciences, MicrobiologyA few times a year, Once a month or moresonika.tyagi@monash.edu, @tsonikaABACBS – Australian Bioinformatics and Computational Biology Society, The Carpentries – Software, Data, Library Carpentry, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & TrainingNGS, RADseq, alignment, de novo assembly, RNAseq, CHIPseq, metagenomics, cancer genomics. R, Python, HPC, open refinehttp://github.com/tsonika
Peter HoytOklahoma State UniversityUSABioinformatics, DNA Sequencing, Genomics, Molecular biologyA few times a yearpeter.r.hoyt@okstate.edu @peterrhoytThe Carpentries – Software, Data, Library Carpentry, CyVerseBioinformatics, Genomics, Sequencing
Alyssa ValcourtJames Madison UniversityUSAScience Librarian who supports Chemistry, Biology, Physics, GeologyA few times a yearvalcouah@jmu.edu @alyssavalcourtACRL- Association of College & Research Libraries
Conor MeehanInstitute of Tropical MedicineBelgiumBioinformatics, DNA Sequencing, Genomics, Health/medical sciencesA few times a yearcon_meehanphylogenetics, molecular epidemiology, pathogen dynamics
Julie McMurryOSUUSAHealth/medical sciences, GSuite for team scienceA few times a year@figgyjamNIH – National Institutes of Healthgsuite, data sciencehttps://data2health.github.io/mtip-tutorial/
Emily LescakUniversity of AlaskaUSABioinformatics, General Life Sciences, Microbiology, Microscopy, Scientific writing, science communicationA few times a yearelescak@alaska.edu; @elescakGenetics Society of Americascience communication, bioinformatics
Olabode AjayiUniversity of the Western Cape/SANBISouth AfricaBioinformatics, Biology mathematics/statistics, DNA Sequencing, Genomics, ProteomicsOnce a year or less3004115@myuwc.ac.zaThe Carpentries – Software, Data, Library Carpentry, Galaxy, H3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, NIH – National Institutes of HealthBioinformatics and Datasciencehttps://github.com/boratonAJ
Lex NederbragtUniversity of OsloNorwayBioinformaticsA few times a yearlex.nederbragt@ibv.uio.no Twitter: @lexnederbragtThe Carpentries – Software and Data CarpentryBioinformatics, Good Practice in Computational Biology, Reproducibility in Computational Biology, Sequencing data analysishttps://github.com/lexnederbragt
Lisa FedererNational Library of MedicicneUSAScientific writing, data management and visualization, R programmingOnce a year or lesslisa.federer@nih.govNIH – National Institutes of HealthR, data management, data visualization, text mininghttps://github.com/informationista/
Lee KatzEnteric Diseases Laboratory Branch, Centers for Disease Control and PreventionUSABioinformaticsOnce a year or less@lskatzgenomic epidemiology, comparative genomics
Adrian GomezCold Spring Harbor LaboratoryUSAGeneral Life Sciences, Neuroscience, Neurobiologist turned Science InformationistA few times a year@cheech_gomezNIH – National Institutes of Health, NSF – National Science Foundation, SFN – Society for Neuroscience
Srihari RadhakrishnanArc BioUSABioinformatics, GenomicsOnce a year or lesssrihari176@gmail.comsequencing, dataviz, bioinformatics, unix, Rhttps://www.linkedin.com/in/srihari-radhakrishnan-6777528/
Karen WordUC Davis / the CarpentriesUSABioinformatics, Ecology, Genomics, Instructor trainingA few times a yearkrlizars@ucdavis.edu, @karen_wordThe Carpentries – Software, Data, Library Carpentry, NIH – National Institutes of Health
Robert DaveyEarlham InstituteUnited KingdomBioinformatics, Scientific writing, Scientific Computing, Soft skills, e.g. poster designA few times a year@frogglestonThe Carpentries – Software, Data, Library Carpentry, CyVerse, ELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy, NSF – National Science FoundationData management, Information Systems, HPC, ontologieshttps://github.com/froggleston
Toby HodgesEMBLGermanyBioinformaticsOnce a month or more@tbyhdgsELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects)Python, Bash, Version Control, Data Management, Regular Expressions, HPChttps://bio-it.embl.de
Umar AhmadUniversiti Putra Malaysia and Malaysia Genome Institute (MGI)MalaysiaBioinformatics, DNA Sequencing, Genomics, Neuroscience, Scientific writingOnce a year or lessbabasaraki@yahoo.co.uk/@babasaraki01H3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, ASBCB – African Society for Bioinformatics and Computational BiologyBioinformatics, R, RNA-seq analysis, Python and Cancer Genomics
Terri AttwoodThe University of ManchesterUnited KingdomBioinformaticsA few times a yearteresa.k.attwood@manchester.ac.ukGOBLET – Global Organisation for Bioinformatics Learning, Education & Trainingprotein sequence analysis, protein family characterisation, protein function annotation, introductory bioinformatics 4 schoolshttps://www.research.manchester.ac.uk/portal/en/researchers/terri-attwood(7df29450-9ecd-4f4d-9e77-32f25f255d97)/publications.html
EdgarMount SinaiUSABiochemistry, Bioinformatics, Biology mathematics/statistics, Cell biology, DNA Sequencing, Ecology, General Life Sciences, Genomics, Marine biology, Metabolomics, Microbiology, Molecular biology, Proteomics, Scientific writingA few times a yeareegonzalezk@gmail.comBioinformatics, Immunology, Biologyhttps://eegk.github.io/
Samuel SeaverArgonne National LaboratoryUSABiochemistry, Bioinformatics, Biology mathematics/statistics, Plant biologyOnce a year or less@samseaverASPB – American Society of Plant Biology
Molly PhillipsUniversity of FloridaUSABioinformatics, Ecology, Marine biology, Plant biologyOnce a month or moremphillips@flmnh.ufl.eduiDigBiobiodiversity, digitization data, natural history collections, biology, K-12, undergraduate, ecologyhttps://www.idigbio.org/
Clint ValentineTwinStrand BiosciencesUSABioinformatics, DNA Sequencing, GenomicsOnce a year or lessvalentine.clint@gmail.comEMGS – Environmental Mutagenesis & Genomics SocietyPython, DNA Sequencing, Reproducible Bioinformatics Analysishttps://github.com/clintval
Sateesh PeriUniversity of Nevada, RenoUSABioinformatics, Cell biology, Molecular biologyA few times a yearperisateesh@nevada.unr.eduThe Carpentries – Software, Data, Library Carpentry, CyVerse
Ahmed MoustafaAmerican University in CairoEgyptBioinformatics, Biology mathematics/statistics, GenomicsA few times a yearamoustafa@aucegypt.eduASM – American Soceity for Microbiology, The Carpentries – Software, Data, Library Carpentry, ISCB – International Society for Computational BiologyBioinformatics, Systems Biology, Population Genetics, Evolution
Denise Carvalho-SilvaEMBL-EBI (Open Targets)United KingdomBioinformatics, Genomics, Health/medical sciences, Drug discoveryOnce a month or more@deniseomeEMBL – European Molecular Biology Laboratory (and all EMBL-related projects)Ensembl genome browser, Open Targets, Genetic variation, Gene annotationhttps://github.com/deniseome
Tyson SwetnamUniversity of ArizonaUSAEcology, Remote SensingA few times a yeartswetnam@cyverse.orgThe Carpentries – Software, Data, Library Carpentry, CyVerse, NEON – National Ecological Observatory Network, NSF – National Science FoundationR, Python, Remote Sensing, GIS, Ecology, Statistics, lidar, structure from motionhttps://tyson-swetnam.github.io/
Moamen ElmassryTexas Tech UniversityUSABioinformatics, MicrobiologyA few times a yearmoamen.elmassry@gmail.com; @MoamenElmassryASM – American Soceity for MicrobiologyR, Unix, RNA-seq, microbiome, visualizationhttps://github.com/MoamenElmassry
Marcia MednickTakara Bio USAUSACell biology, DNA Sequencing, General Life Sciences, Microbiology, Molecular biologyOnce a month or moremarciamednick@gmail.com
Marco ChiapelloItalian National Research CouncilItalyBioinformatics, DNA Sequencing, Genomics, Plant biology, ProteomicsA few times a yearchiapello.m@gmail.com / marpello1980The Carpentries – Software, Data, Library Carpentry, ELIXIRR, data analysis, proteomics analysis
Naupaka ZimmermanUniversity of San FranciscoUSABioinformatics, Biology mathematics/statistics, Ecology, GenomicsA few times a year@naupakazASM – American Soceity for Microbiology, The Carpentries – Software, Data, Library Carpentry, ESA – Ecological society of america, NEON – National Ecological Observatory Network, NSF – National Science Foundationmicrobial ecology, community ecology, reproducible researchhttp://z-lab.io/
Jeff OliverUniversity of ArizonaUSABioinformatics, Ecology, EvolutionOnce a month or morejcoliver@email.arizona.edu, @jcoliverAZThe Carpentries – Software, Data, Library Carpentry, CyVerseR, python, phyloinformaticshttps://jcoliver.github.io/learn-r
Sarah StevensUniversity of Wisconsin – MadisonUSABioinformatics, Ecology, GenomicsA few times a year@microStevensThe Carpentries – Software, Data, Library Carpentryhttp://sarahlrstevens.info
Chissa RivaldiUniversity of Notre DameUSABioinformatics, Biology mathematics/statistics, DNA Sequencing, Ecology, General Life Sciences, Population geneticsA few times a yearclrivaldi@gmail.com, @powerofcheezThe Carpentries – Software, Data, Library Carpentrybash, python; r, anatomy, physiology, population genetics, GIShttps://github.com/crivaldi
Chris FieldsUniversity of Illinois Urbana-ChampginUSABioinformatics, DNA Sequencing, Microbiome/Metagenome, Genomicsseveral times a year (varies)@cjfieldsThe Carpentries – Software, Data Carpentry; BD2K; H3ABioNet – Pan African Bioinformatics networkHPC, Python, R, Perl, Genomics, Epigenome, Metagenome, Microbiomehttps://github.com/HPCBio
Alexander BotzkiVIBBelgiumBioinformatics, Cheminformatics, General Life SciencesA few times a yearalexander.botzki@vib.be, @vibbioinfocoreELIXIRbash, python, docker, bioconda, protein structure analysishttps://www.bits.vib.be
Bérénice BatutUniversity of FreiburgGermanyBioinformatics, GenomicsA few times a yearberenice.batut@gmail.com @bebatutThe Carpentries – Software, Data, Library Carpentry, ELIXIR, Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & Traininghttp://research.bebatut.fr/
Sean DavisNational Cancer Institute, NIHUSABioinformatics, Biology mathematics/statistics, Genomics, Health/medical sciencesA few times a yearNIH – National Institutes of Health, Cold Spring Harbor LaboratoryBioinformatics, Data Science, Cloud and Distributed Computing, Reproducible Research, Science IT, Rhttps://seandavi.github.io/
James TaylorJohns HopkinsUSABioinformatics, DNA Sequencing, General Life Sciences, Genomics, Molecular biologyA few times a year@jxtxGalaxy, ISCB – International Society for Computational Biology, NIH – National Institutes of Health, NSF – National Science Foundationhttps://taylorlab.org
Ann Meyerbioinformatics.caCanadaBioinformaticsA few times a yearcourse_info@bioinformatics.caGOBLET – Global Organisation for Bioinformatics Learning, Education & Traininghttps://bioinformaticsdotca.github.io/
Henk den BakkerUniversity of GeorgiaUSABioinformatics, Biology mathematics/statistics, DNA Sequencing, Genomics, MicrobiologyA few times a yearhenkcdenbakker@gmail.comASM – American Society for Microbiologyhttps://github.com/hcdenbakker
Mark DunningUniversity of SheffieldUnited KingdomBioinformatics, Genomics, Software and Data CarpentryA few times a yearm.j.dunning@sheffield.ac.uk, twitter:@DrMarkDunningThe carpentries-Software,Databioinformatics,R,genomics,RNA-seqSheffield Bioinformatics Core
Piraveen Piv GopalasingamEuropean Bioinformatics Institute (EMBL-EBI)United KingdomBioinformaticsOnce a month or morepiv@ebi.ac.uk , @cascade21ELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy, ISCB – International Society for Computational Biology
Niall BeardUniversity of ManchesterUnited KingdomBioinformaticsOnce a year or lessniall.beard@manchester.ac.uk / @niall_beardThe Carpentries – Software, Data, Library Carpentry, ELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training
Peter RiceOryza BioinformaticsUnited KingdomBioinformatics, Biology mathematics/statistics, General Life Sciences, Genomics, Health/medical sciences, Molecular biologyA few times a yearricepeterm@yahoo.co.uki2b2-tranSMART Foundation
Ted LaderasOregon Health & Science UniversityUSABioinformatics, Biology mathematics/statistics, Health/medical sciencesA few times a year@tladeras
Jonathan CummingsSchool for Marine Science and TechnologyUSABiology mathematics/statistics, Ecology, Structured Decision MakingA few times a yearjonathan.cummings@gmail.comSociety of Conservation Biology
Kate HertweckFred Hutch Cancer Research CenterUSABioinformatics, Biology mathematics/statistics, GenomicsOnce a month or more@k8hert, k8hertweck@gmail.comThe Carpentries – Software, Data, Library Carpentry
Jarrett ByrnesUniversity of Massachusetts BostonUSAEcology, Marine biologyA few times a yearjebyrnesThe Carpentries – Software, Data, Library Carpentry, ESA – Ecological society of america, NSF – National Science Foundation
Mateusz KuzakDutch Techcentre fo Life Sciencesthe NetherlandsBioinformatics, Software Engineering, Data AnalysisA few times a year@matkuzak mateusz.kuzak@dtls.nlthe Carpentries, ELIXIR, RSEPedagogy, R, Python, Docker, Jupyter
Chantal HuijbersGriffith UniversityAustraliaBioinformatics, EcologyOnce a month or morec.huijbers@griffith.edu.auAustralian Research Data Commonsbiodiversity modelling, data quality, ecological data science, train-the-trainerhttp://ecoed.org.au/
Siva ChudalayandiIowa State UniversityUSABioinformatics, Plant biologyA few times a yearcsiva@iastate.eduCyVerse, Galaxy, NSF – National Science Foundation, USDARNAseq; Genome Assemblyhttps://isugenomics.github.io/bioinformatics-workbook/
Patricia PalagiSIB Swiss Institute of BioinformaticsSwitzerlandBioinformatics, Proteomics, Train the trainerA few times a yearpatricia.palagi@sib.swissELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational BiologyTrain-the-trainer, training organisation, training planning and strategyhttps://github.com/TrainTheTrainer/ELIXIR-EXCELERATE-TtT
Jacqueline CampbellIowa State UniversityUSABioinformatics, DNA Sequencing, Genomics, Data CurationOnce a year or lessjdjax@iastate.edu @Campbell_JD_PhDAgBioDataData Curation, Bioinformatics, Genetics/Genomicshttps://www.agbiodata.org/
Mike TriznaSmithsonian InstitutionUSABioinformatics, DNA Sequencing, Ecology, General Life Sciences, Genomics, Metagenomics, Data ScienceOnce a month or moretriznam@si.edu; @miketriznaThe Carpentries – Software, Data, Library CarpentryGenomics, Data Science, Machine Learninghttps://github.com/MikeTrizna
Jenny DrnevichUniversity of Illinois Urbana-ChampaignUSABioinformatics, Biology mathematics/statistics, DNA Sequencing, GenomicsA few times a year, Once a month or moredrnevich@illinois.eduThe Carpentries – Software, Data, Library Carpentry, H3ABioNet – Pan African Bioinformatics networkR, Linux, Cluster Computing, RNASeq, 16S
Jessica HolmesUniversity of Illinois at Urbana – ChampaignUSABioinformatics, DNA Sequencing, Genomics, Transcriptomics, MetagenomicsOnce a month or morejholmes5@illinois.eduThe Carpentries – Software, Data, Library Carpentry, H3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, BD2KBash, R, RNA-Seq, microbial profiling, genome browsers, git, genome assembly
Gabriella RusticiUniversity of CambridgeUnited KingdomBioinformatics, Biology mathematics/statistics, Genomics, Health/medical sciences, Metabolomics, Proteomics, ImagingOnce a month or moregr231@cam.ac.ukThe Carpentries – Software, Data, Library Carpentry, ELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational Biology, Health Data Research UKbioinformatics; biology; data science; training development; training infrastructurehttps:/training.csx.cam.ac.uk/bioinformatics/Event-timetable
Scott CainOntario Institute for Cancer ResearchUSABioinformatics, GenomicsA few times a yearscott@scottcain.netGMODJBrowse,Chado,Tripalhttp://gmod.org/wiki/User:Scott
Robert WaterhouseUniversity of LausanneSwitzerlandBioinformatics, GenomicsA few times a yearrobert.waterhouse@gmail.com @rmwaterhousebiocuration, gene annotationhttps://rmwaterhouse.org/profile
Jeff PummillUniversity of ArkansasUSABioinformatics, DNA Sequencing, Genomics, scientific computing resources and best practicesA few times a yearjpummil@uark.eduThe Carpentries – Software, Data, Library Carpentry, NSF – National Science Foundationnanopore assembly hpc
Joseph WeaverNorth Carolina State UniversityUSABioinformatics, DNA Sequencing, Ecology, Genomics, Microbiology, Microscopy, Environmental BiotechnologyA few times a yearjeweave4@ncsu.edu @Joe_E_WeaverNSF – National Science Foundation, US Department of Education – GAANNbioinformatics, data visualization, data sciencehttps://github.com/joeweaver/get_to_know_phyloseq
Eduardo Rodríguez-RománVenezuelan Institute for Scientific ResearchVenezuelaBioinformatics, DNA Sequencing, General Life Sciences, Microbiology, Molecular biology, VirologyA few times a yearerodriguezroman@gmail.comASM – American Soceity for Microbiology, Galaxy, eLIFE Community, American Society for VirologyVirology, Molecular Epidemiology, Virus Evolution
Candace SavonenAlex’s Lemonade Stand FoundationUSABioinformaticsA few times a yearcansav09@gmail.comISCB – International Society for Computational Biologygene expression, single-cell, RNA-seqhttps://github.com/alexslemonade
Philipp BayerUniversity of Western AustraliaAustraliaBioinformatics, GenomicsA few times a yearphilipp.bayer@uwa.edu.au @philippbayerABACBS – Australian Bioinformatics and Computational Biology Society, The Carpentries – Software, Data, Library Carpentry, EMBL-ABRbioinformatics,genomics,R/tidyverse,Python,bash,SQL,git
Boas PuckerCenter for Biotechnology (CeBiTec), Bielefeld UniversityGermanyBioinformatics, DNA Sequencing, Genomics, Molecular biology, Plant biology, Scientific writingA few times a year@boas_puckerCyVerse, DFG – German Research Foundationgenomics, Python, applied bioinformatics, RNA-Seq analysis, genetic engineering, iGEM, plant biology, sequencinghttps://www.cebitec.uni-bielefeld.de/~bpucker
Arindam BasuUniversity of CanterburyNew ZealandGenomics, Health/medical sciences, Scientific writingA few times a year@arinbasuThe Carpentries – Software, Data, Library Carpentry, CyVersedata analysis, R, Jupyter notebooks,https://www.canterbury.ac.nz/education/contact-us/people/arindam-basu.html
Robert HaaseMPI-CBGGermanyBioinformatics, Biology mathematics/statistics, Image AnalysisOnce a month or more@haesleinhuepfNEUBIASImage Analysis, Smart Microscopy, Software Engineering, GPU-accelerationhttps://github.com/haesleinhuepf
Lilach SheinerUniversity of GlasgowUnited KingdomBiochemistry, Cell biology, Microbiology, Molecular biology, parasitologyOnce a year or less@SheinerLabASM – American Soceity for Microbiology, Wellcome trust, Gates foundation, Burrough Wellcome fundParasite biology, molecular biologyhttp://lilachsheiner.wixsite.com/sheinerlab-wtcmp
David ArmstrongPDBe (EMBL-EBI)United KingdomBiochemistry, Bioinformatics, Structural BiologyA few times a yeardavida@ebi.ac.uk, @daveasciELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects)Structural biology, protein structure, biochemistry, proteins, structure prediction, NMR.https://www.ebi.ac.uk/about/people/david-armstrong
Walid GharibSwiss Institute of BioinformaticsSwitzerlandBioinformatics, Biology mathematics/statistics, DNA Sequencing, GenomicsA few times a yearELIXIR
Shishir PantHelainki UniversityFinlandCell biology, Molecular biology, Scientific writingOnce a year or lessshishir.pant64@gmail.comCancer biology, scientific writinghttps://chasingcancer.com/
Ronnie de JongeUtrecht UniversityThe NetherlandsBioinformatics, DNA Sequencing, Genomics, MicrobiologyA few times a yearr.dejonge@uu.nlMicrobial genomics, genome (re)sequencing, genome annotation
Brian RepkoPreviously Novartis Institutes for Biomedical ResearchUSABioinformatics, Cell biology, DNA Sequencing, General Life Sciences, Genomics, Health/medical sciences, Metabolomics, Molecular biology, ProteomicsOnce a year or lessbrian.repko@gmail.comGA4GH, BigDataGenomicsdrug discovery, basic molecular biologyhttps://github.com/brianrepko
Nirav MerchantUniversity of ArizonaUSABioinformatics, Cloud/Computational InfrastructureA few times a yearnirav@email.arizona.eduThe Carpentries – Software, Data, Library Carpentry, CyVerse, ISCB – International Society for Computational Biology, NIH – National Institutes of Health, NEON – National Ecological Observatory Network, NSF – National Science Foundationcloud scalability data-managementhttp://www.cyverse.org
Osvaldo Reis JuniorUnicampBrazilBioinformaticsA few times a yearosvaldor@unicamp.brLaCTAD – Central Laboratory of High Throughput Technologies in Life Science
Amber LeckenbyUniversity of BradfordUnited KingdomBiochemistry, Bioinformatics, Cell biology, DNA Sequencing, General Life Sciences, Genomics, Metabolomics, Molecular biologyA few times a year@amberleckenbyData carpentryunix, genome assesmbly, metagenomics, microbiome, R stats
Jeanette McCarthyPrecision Medicine Advisors, Duke University, UCSFUSAGenomics, Health/medical sciencesA few times a yearjeanette@pmedadvisors.comprecision medicine, pharmacogenomics, genetic testinghttps://www.precisionmedicineadvisors.com/
Jasleen GrewalUniversity of British ColumbiaCanadaBioinformatics, Genomics, Molecular biologyA few times a yearGenome Canada, ISCB – International Society for Computational Biologygenetics;machine-learning;codinghttps://jasgrewal.github.io/tutorials/
Joanna KelleyWashington State UniversityUSABioinformatics, DNA Sequencing, GenomicsOnce a year or lessjoanna.l.kelley@wsu.edu, @joannalkelleyNSF – National Science Foundationgenomics, transcriptomics, bioinformaticshttps://labs.wsu.edu/genomes
Gabriela ChavezAuburn University, Department of Biological SciencesUSABiochemistry, Cell biology, Health/medical sciences, Molecular biologyA few times a yeargabriela.chavez@auburn.eduASM – American Soceity for MicrobiologyVirology, RNA viruses, emerging viruses, virus evolutionhttps://github.com/gabrielachavez2019
Laurent GattoUCLouvain, de Duve InstituteBelgiumBioinformatics, Genomics, Proteomics, Reproducible researchA few times a year@lgatt0The Carpentries – Software, Data, Library CarpentryR, githttps://lgatto.github.io/
Lucia CottoneUniversity College LondonUnited kingdomCell biology, Molecular biologyOnce a year or lessl.cottone@ucl.ac.ukCancer, epigenetic
Alina Freire-FierroUniversida Tecnica de CotopaxiEcuadorGeneral Life Sciences, Plant biologyOnce a year or lessAlina.ff@gmail.comIAPT-International Society of Plant TaxonomyGeneral Botany, Neitropical Floristics, Collections Management in Herbaria
Mark CroweQCIFAustraliaBioinformatics, Biology mathematics/statistics, GenomicsA few times a yearmark.crowe@qcif.edu.au @marklcroweThe Carpentries – Software, Data, Library Carpentry, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), GalaxyGenomics, Galaxy, R
Adrien MelquiondUniversity Medical Center Utrecht / Utrecht University / Utrecht Bioinformatics CenterThe NetherlandsBioinformatics, Biology mathematics/statistics, Genomics, Molecular ModellingA few times a yearhttps://twitter.com/AMelquiondThe Carpentries – Software, Data, Library Carpentry, ELIXIR, ISCB – International Society for Computational BiologyR, Python, Bioinformatics, Molecular Modelling, Molecular Dynamics, Molecular Docking, Biostatisticshttps://www.uu.nl/staff/ASJMelquiond
Peter McQuiltonUniversity of OxfordUnited KingdomBioinformatics, General Life SciencesA few times a year@drosophilicELIXIR, International Society of Biocurators, RDA, GO-FAIR…Standards, FAIR data, Research Data Management
Dayana E. Salas-LeivaDalhousie UniversityCanadaBioinformatics, DNA Sequencing, Genomics, MicrobiologyOnce a year or less
Igor DolgalevNew York University School of MedicineUSABioinformatics, DNA Sequencing, GenomicsA few times a yearigor.dolgalev@nyumc.org
MD SharmaUniversity of ExeterUnited KingdomBioinformatics, DNA Sequencing, General Life Sciences, Genomics, Metabolomics, Microscopy, Molecular biologyOnce a year or lessm.d.sharma@exeter.ac.ukThe Carpentries – Software, Data, Library Carpentryhpc,Linux, Informatics
Emma RandUniversity of York, UKUnited KingdomBioinformatics, Biology mathematics/statistics, Metabolomics, ProteomicsA few times a yearemma.rand@york.ac.uk @er13_rRoyal Society of Biology, the Biochemical Societydata analysis, data visualisation, R, Python, reproducibility, Teaching and learninghttps://www.york.ac.uk/biology/our-staff/emma-rand/
Pamela ShawNorthwestern University Feinberg School of MedicineUSABioinformatics, General data management conceptsA few times a yearp-shaw2@northwestern.eduThe Carpentries – Software, Data, Library Carpentry, ISCB – International Society for Computational Biologygenome browsers, command linehttps://github.com/galterdatalab
Michelle JonesCedars-Sinai Medical CenterUSBioinformatics, GenomicsOnce a year or lessMichelle.jones@csmc.eduGenetic Epidemiology, Genomics, Genetics
Daniel BlankenbergLerner Research Institute, Cleveland ClinicUSABioinformatics, DNA Sequencing, General Life Sciences, Genomics, Molecular biologyA few times a year@DBlankenbergGalaxy, ISCB – International Society for Computational Biology, NIH – National Institutes of Healthhttp://blankenberglab.org/
Lok Raj JoshiSouth Dakota State UniversityUSADNA Sequencing, Genomics, Microbiology, Molecular biology, Virologylokraj2003@hotmail.comR programming, Viral Bioinformatics, Virology, Molecular Biologyhttp://www.lokspage.netlify.com
Pamela ShawNorthwestern University Feinberg School of MedicineUSABioinformatics, Scientific writing, NIH Public Access ComplianceOnce a month or morep-shaw2@northwestern.eduThe Carpentries – Software, Data, Library Carpentry, ISCB – International Society for Computational Biology, NIH – National Institutes of Healthgenome browsers, bioinformatics (general), basic command linehttps://galterdatalab.github.io/
Dipankar DuttaNational Institutes of HealthUSABiology mathematics/statistics, Neuroscience, Data Science for Life SciencesOnce a month or moredipankardutta@scientificcitizen.org; @duttajdipNIH – National Institutes of Health, SFN – Society for NeuroscienceData Science for Life Scienceshttps://scientificcitizen.org
Noushin GhaffariGenomics and Bioinformatics, Texas A&M AgriLife Research Research Scientist, Texas A&M High Performance Research ComputingUSABioinformatics, Biology mathematics/statistics, DNA Sequencing, General Life Sciences, Genomics, Plant biologyOnce a month or morenghaffari@tamu.eduThe Carpentries – Software, Data, Library CarpentryGenome assembly, metagenmics, statistical analysis, computational biologyhttps://www.linkedin.com/in/noushin-ghaffari-a8197133
Nathan MeddUniversity of EdinburghUnited KingdomBioinformatics, Ecology, EntomologyOnce a month or morenathan.medd@ed.ac.ukThe Carpentries – Software, Data, Library Carpentry, ELIXIRbioinformatics, R, Linux, Genome Assembely, Metagenomics, RNA-seq, Entomology, Ecologyhttp://genomics.ed.ac.uk/services/training
Alana AlexanderUniversity of OtagoNew ZealandBioinformatics, GenomicsA few times a yearalana.alexander@otago.ac.nz, @laninskyThe Carpentries – Software, Data, Library CarpentryMolecular ecology, R, genomicshttps://gemmell-lab.otago.ac.nz/our-team/19-team/research-and-postdoctoral-research-fellows/138-dr-alana-alexander
Jill WegrzynUniversity of ConnecticutUSABioinformatics, Biology mathematics/statistics, DNA Sequencing, General Life Sciences, Genomics, Molecular biology, Plant biology, Scientific writingA few times a yearjill.wegrzyn@uconn.edu @JillWegrzynGalaxy, ISCB – International Society for Computational Biology, NEON – National Ecological Observatory Network, NSF – National Science Foundation, USDAbioinformatics, plant genomics, genome annotationhttp://plantcompgenomics.com
Ana PanigassiSelf employedIrelandHealth/medical sciences, Scientific writingA few times a year@ana_panigassiClinical mentor, science communicationhttps://anapanigassi.wixsite.com/anapanigassi
Alexander PicoGladstone InstitutesUSABioinformatics, Network biologyA few times a yearalex.pico@gladstone.ucsf.eduELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational Biology, NIH – National Institutes of Healthnetwork biology, cytoscapehttp://tutorials.cytoscape.org
Manuel CorpasCambridge Precision MedicineUnited KingdomClinical Genomics, Bioinformatics, Next Generation Sequencing, Precision MedicineA few times a year@manuelcorpasClinical Genomics, Bioinformatics, Next Generation Sequencing, Precision Medicine
Rebecca BatorskyTufts UniversityUSAR, python, HPC, Linux, BioinformaticsA few times a yearrebecca.batorsky@tufts.eduR, python, HPC, Linux, Bioinformatics
Geraldine Van der AuweraBroad InstitutionUSAGenomics, Variant discovery analysis, Pipelining, Jupyter notebooks, Cloud computing for scientistsA few times a year@VdaGeraldineGenomics, Variant discovery analysis, Pipelining, Jupyter notebooks, Cloud computing for scientists
April Clyburne-SherinCode OceanUSAReproducibility (computational and empirical), data management, open data and code, R, literate programming (Jupyter Notebooks and RMarkdown), curriculum development, and instructor training.A few times a year@april_csOpenCon, Reproducibility 4 Everyone Collaboration, Mozilla Mentors, Carpentries, WholeTale Education Working Group, Reproducibility Ambassador Program, AllTrialsReproducibility (computational and empirical), data management, open data and code, R, literate programming (Jupyter Notebooks and RMarkdown), curriculum development, and instructor training.
Ana Paula PanigassiSelf employedIrelandClinical MentoringA few times a yearClinical Mentoringhttps://anapanigassi.wixsite.com/anapanigassi
Madelaine GogolStowers InstituteUnited StatesBioinformatics, GenomicsA few times a yearmcm@stowers @mmarchinR,Linux,RNA-seq,ChIP-seq,scRNA-seq
Ben MooreEMBL-EBIUnited KingdomBioinformatics, GenomicsOnce a month or morebmoore@ebi.ac.uk, twitter: @BENsemblEMBL – European Molecular Biology Laboratory (and all EMBL-related projects)Ensembl, Genome browsers, Gene annotation, Genetic variation, IGSRhttps://github.com/Ben-Ensembl
Gareth PriceQueensland Facility of Advanced BioinformaticsAustraliaBioinformatics, DNA Sequencing, General Life Sciences, GenomicsA few times a yearg.price@qfab.org; @DrGPriceGalaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & TrainingBioinformatics, NGS QC, Galaxy, Clinical Genomicshttps://qfab.org/team-member/dr-gareth-price
Luis CunhaUniversity of South WalesPortugal & United KingdomBioinformatics, DNA Sequencing, Ecology, Genomics, Molecular biology, Soil BiologyOnce a year or lessluisnevescunha@gmail.comISCB – International Society for Computational Biology, Tpinet.orgGenomics, Functional Genomics, Eukaryotic genomes, Biodiversity, Anthropogenic Ecosystems, Biodiversity assessment, Soil Biology, Tropical Ecology, Historical ecosystem reconstruction, Phylogenetics/omics, Invertebrate Biologyhttp://luiscunha.xyz
David GaboriauImperial College LondonUnited KingdomBiochemistry, Cell biology, Microscopy, BioImage AnalysisA few times a year@dgaboriauNEUBIAS, IAFIG-RMSmicroscopy, bioimage analysis
Amel GhouilaH3ABioNetTunisia/USABioinformatics, Genomics, Scientific writingA few times a yearamel.ghouila@gmail.com / @AmelGhouilaH3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, African Society of Bioinformatics and Computational Biologybioinformatics, open science, community buildinghttps://amelgh.github.io/
Benjamin MooreEnsembl, EMBL-EBIUnited KingdomBioinformatics, Genomics, EnsemblOnce a month or morebmoore@ebi.ac.ukELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects)Ensembl, Genomics, Bioinformatics, Genetic Variation,https://www.ebi.ac.uk/about/people/benjamin-moore
Caleb KibetInternational Centre of Insect Physiology and EcologyKenyaBioinformatics, GenomicsA few times a yearkipkuruis@hotmail.com Twitter: @calkibetH3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational BiologyPython, Regulatory Genomics, Bioinformatics Workflows, Linux, Open Science Tool: Git and GitHubhttps://github.com/kipkurui
Venkat MalladiUT SouthwesternUSABioinformatics, GenomicsA few times a yearvenkat.malladi@utsouthwesternPython, Genomics, Data Science, Software Engineering
Patricia Carvajal LopezBioinformatics Laboratory UABCMéxicoBioinformaticsA few times a yearEMBL – European Molecular Biology Laboratory (and all EMBL-related projects), ISCB – International Society for Computational BiologyRNA-Seq, NGS, HMM, Linux
Hans-Rudolf HotzFriedrich Miescher Institute for Biomedical ResearchSwitzerlandBioinformaticsOnce a month or morehrh@fmi.chELIXIR, Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational Biology, SIB – Swiss Institute of BioinformaticsGalaxy, NGShttps://training.galaxyproject.org/training-material/
Zimai LiUniversity of MunichGermanyBiology mathematics/statistics, Ecology, General Life Sciences, Genomics, Evolutionary BiologyA few times a yearzimai.li@evobio.euBehavioral Ecology
Lena KarvovskayaVrije Universiteit van AmsterdamNetherlandsResearch data managementA few times a yeare.karvovskaya@vu.nlmetadata, archiving, open data, FAIR principles
Sarah StryeckGraz University of Technology, AustriaAustriaBiochemistry, BioinformaticsA few times a yearsarah.stryeck@tugraz.atThe Carpentries – Software, Data, Library Carpentry, CyVerseDocker, metabolomics
Nur-Taz RahmanYale University School of MedicineUnited StatesBioinformatics, Cell biology, DNA Sequencing, General Life Sciences, Genomics, Metabolomics, Molecular biology, Scientific writingOnce a month or more@NurTaz_Rahman; email: nur-taz.rahman@yale.eduBioinformatics Support Program @ Cushing/Whitney Medical Library at YaleR, RStudio, single-cell analysis, RNA-seq, ChIP-seq, UNIX, Python, Galaxy, GSEAhttps://medicine.yale.edu/profile/nur-taz_rahman/
Benjamin MooreEMBL-EBI (Ensembl)UKBioinformatics, GenomicsOnce a month or morebmoore@ebi.ac.uk, @BENsemblEMBL – European Molecular Biology Laboratory (and all EMBL-related projects)Ensembl genome browser, genomics, genetic variation, gene annotation, Ensemblhttps://www.ebi.ac.uk/about/people/benjamin-moore
Amanda CharbonneauUC DavisUSABioinformatics, Biology mathematics/statistics, DNA Sequencing, GenomicsA few times a yearachar@ucdavis.eduThe Carpentries – Software, Data, Library Carpentry, NIH – National Institutes of Healthhttps://acharbonneau.github.io/
Marta LloretEMBL-EBIUKBiochemistry, Bioinformatics, Genomics, Molecular biologyA few times a yearELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects)
Jessime KirkCodeStoriesUSBioinformatics, GenomicsOnce a year or lesscodestories2018@gmail.comPython, Applied Bioinformatics, Sequence Analysis, Numpy, Pandas, Image Analysis, Software Engineeringhttps://mycodestories.com/
Astrid GallEMBL-EBI and Lucy Cavendish College, University of Cambridge, UKUnited KingdomBioinformatics, GenomicsOnce a month or moreEMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Wellcome TrustEnsembl, REST API, Train the Trainer, Genomics, Bioinformaticshttps://www.ebi.ac.uk/about/people/astrid-gall
Obdulia Segura-LeonColegio de PostgraduadosMéxicoAgrogenomicOnce a year or lesssleon@colpos.mxHomology, alignment, motivs and protein domains, phylogeny, adaptation by sinonimus no sinonimus ratios,
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