Trainer’s Registry

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Name Institution Country Training topics Training frequency Contact info Communities/Funders Training tags Links
Jason Williams Cold Spring Harbor Laboratory USA Bioinformatics, Molecular Biology A few times a year williams@cshl.edu, twitter: @JasonWilliamsNY The Carpentries – Software, Data, Library Carpentry, CyVerse, NIH Data Commons Molecular cloning, R, Python, Jupyter, Docker, cloud computing, RNA-Seq, education and assessment http://jasonjwilliamsny.github.io/profile/
Ben Langmead Johns Hopkins University USA Bioinformatics, DNA Sequencing, Genomics Once a year or less ben.langmead@gmail.com ISCB – International Society for Computational Biology, NIH – National Institutes of Health, NSF – National Science Foundation algorithms, data structures, programming http://www.langmead-lab.org/teaching-materials
Amina Echchiki Swiss Institute of Bioinformatics / University of Lausanne Switzerland Bioinformatics, DNA Sequencing, General Life Sciences, Genomics A few times a year a.echchiki@gmail.com; twitter: @aechchik ELIXIR, SIB Training bioinformatics, genome assembly, long reads sequencing
Vicky Schneider Amazon and University of Melbourne United Kingdom Bioinformatics, Ecology, General Life Sciences, Scientific writing, Evolutionary biologist A few times a year Mvschneiderg@gmail.com Galaxy Bioinformatics, population genetics, ecology and evolution of biodiversity, introduction to ML
Nick Wong Monash university Australia Bioinformatics, Genomics A few times a year Nick.wong@monash.edu ABACBS – Australian Bioinformatics and Computational Biology Society R, genomics, RNA-Seq https://github.com/MonashBioinformaticsPlatform
Ming Tang Harvard USA Bioinformatics, DNA Sequencing, Genomics A few times a year tangming2005@gmail.com NIH – National Institutes of Health ChIP-Seq, single cell RNA-Seq, unix shell, R, snakemake https://divingintogeneticsandgenomics.rbind.io/
Ben Harris Cold Spring Harbor Laboratory USA Bioinformatics Once a year or less bharris@cshl.edu @b_harris_12 python
Alex Whan CSIRO Australia Bioinformatics, Genomics A few times a year @alexwhan ABACBS – Australian Bioinformatics and Computational Biology Society, The Carpentries – Software, Data, Library Carpentry R, git
Noah Fahlgren Donald Danforth Plant Science Center USA Bioinformatics, Genomics, Plant biology, Phenotyping A few times a year nfahlgren@danforthcenter.org, Twitter: @NoahFahlgren ASPB – American Society of Plant Biology, ISCB – International Society for Computational Biology, NSF – National Science Foundation image analysis, statistics, bioinformatics https://www.danforthcenter.org/scientists-research/principal-investigators/noah-fahlgren
Peter van Heusden South African National Bioinformatics Institute, University of the Western Cape South Africa Bioinformatics A few times a year pvanheus Galaxy, ASBCB – African Society for Bioinformatics and Computational Biology python, microbial bioinformatics, galaxy
Radhika Khetani Harvard University USA Bioinformatics, DNA Sequencing, Genomics Once a month or more khetani.r@gmail.com, rs_khetani The Carpentries – Software, Data, Library Carpentry, Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, H3ABioNet – Pan African Bioinformatics network R, HPC, NGS, Data management https://hbctraining.github.io/main
Fotis E. Psomopoulos Institute of Applied Biosciences (INAB/CERTH) Greece Bioinformatics, Biology mathematics/statistics A few times a year @fopsom The Carpentries – Software, Data, Library Carpentry, ELIXIR, ISCB – International Society for Computational Biology NGS Data Analysis, R (Intro / Advanced), Machine Learning for Life Sciences, Reproducibility approaches (Docker, CWL) https://fpsom.github.io
Sandra Porter Austin Community College, Shoreline Community College, Digital World Biology LLC USA Biochemistry, Bioinformatics, Genomics, Microbiology, I have also taught Genetics, Immunology, and lots of biotech lab courses – cloning, sequencing, tissue culture, immunochemistry, protein purification, media and solution prep, GMPs A few times a year digitalbio@gmail.com @digitalbio ASM – American Soceity for Microbiology, NSF – National Science Foundation, Bio-Link, NABT (National Association of Biology Teachers) Bioinformatics for biologists, and Bioinformatics for biology instructors https://DWBio.com
Mauricio Barrientos Karolinska Institutet Sweden Bioinformatics, Genomics Once a year or less mauricio.barrientos@ki.se
Sonika Tyagi Monash University Australia Bioinformatics, Biology mathematics/statistics, DNA Sequencing, General Life Sciences, Genomics, Health/medical sciences, Microbiology A few times a year, Once a month or more sonika.tyagi@monash.edu, @tsonika ABACBS – Australian Bioinformatics and Computational Biology Society, The Carpentries – Software, Data, Library Carpentry, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training NGS, RADseq, alignment, de novo assembly, RNAseq, CHIPseq, metagenomics, cancer genomics. R, Python, HPC, open refine http://github.com/tsonika
Peter Hoyt Oklahoma State University USA Bioinformatics, DNA Sequencing, Genomics, Molecular biology A few times a year peter.r.hoyt@okstate.edu @peterrhoyt The Carpentries – Software, Data, Library Carpentry, CyVerse Bioinformatics, Genomics, Sequencing
Alyssa Valcourt James Madison University USA Science Librarian who supports Chemistry, Biology, Physics, Geology A few times a year valcouah@jmu.edu @alyssavalcourt ACRL- Association of College & Research Libraries
Conor Meehan Institute of Tropical Medicine Belgium Bioinformatics, DNA Sequencing, Genomics, Health/medical sciences A few times a year con_meehan phylogenetics, molecular epidemiology, pathogen dynamics
Julie McMurry OSU USA Health/medical sciences, GSuite for team science A few times a year @figgyjam NIH – National Institutes of Health gsuite, data science https://data2health.github.io/mtip-tutorial/
Emily Lescak University of Alaska USA Bioinformatics, General Life Sciences, Microbiology, Microscopy, Scientific writing, science communication A few times a year elescak@alaska.edu; @elescak Genetics Society of America science communication, bioinformatics
Olabode Ajayi University of the Western Cape/SANBI South Africa Bioinformatics, Biology mathematics/statistics, DNA Sequencing, Genomics, Proteomics Once a year or less 3004115@myuwc.ac.za The Carpentries – Software, Data, Library Carpentry, Galaxy, H3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, NIH – National Institutes of Health Bioinformatics and Datascience https://github.com/boratonAJ
Lex Nederbragt University of Oslo Norway Bioinformatics A few times a year lex.nederbragt@ibv.uio.no Twitter: @lexnederbragt The Carpentries – Software and Data Carpentry Bioinformatics, Good Practice in Computational Biology, Reproducibility in Computational Biology, Sequencing data analysis https://github.com/lexnederbragt
Lisa Federer National Library of Medicicne USA Scientific writing, data management and visualization, R programming Once a year or less lisa.federer@nih.gov NIH – National Institutes of Health R, data management, data visualization, text mining https://github.com/informationista/
Lee Katz Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention USA Bioinformatics Once a year or less @lskatz genomic epidemiology, comparative genomics
Adrian Gomez Cold Spring Harbor Laboratory USA General Life Sciences, Neuroscience, Neurobiologist turned Science Informationist A few times a year @cheech_gomez NIH – National Institutes of Health, NSF – National Science Foundation, SFN – Society for Neuroscience
Srihari Radhakrishnan Arc Bio USA Bioinformatics, Genomics Once a year or less srihari176@gmail.com sequencing, dataviz, bioinformatics, unix, R https://www.linkedin.com/in/srihari-radhakrishnan-6777528/
Karen Word UC Davis / the Carpentries USA Bioinformatics, Ecology, Genomics, Instructor training A few times a year krlizars@ucdavis.edu, @karen_word The Carpentries – Software, Data, Library Carpentry, NIH – National Institutes of Health
Robert Davey Earlham Institute United Kingdom Bioinformatics, Scientific writing, Scientific Computing, Soft skills, e.g. poster design A few times a year @froggleston The Carpentries – Software, Data, Library Carpentry, CyVerse, ELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy, NSF – National Science Foundation Data management, Information Systems, HPC, ontologies https://github.com/froggleston
Toby Hodges EMBL Germany Bioinformatics Once a month or more @tbyhdgs ELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects) Python, Bash, Version Control, Data Management, Regular Expressions, HPC https://bio-it.embl.de
Umar Ahmad Universiti Putra Malaysia and Malaysia Genome Institute (MGI) Malaysia Bioinformatics, DNA Sequencing, Genomics, Neuroscience, Scientific writing Once a year or less babasaraki@yahoo.co.uk/@babasaraki01 H3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, ASBCB – African Society for Bioinformatics and Computational Biology Bioinformatics, R, RNA-seq analysis, Python and Cancer Genomics
Terri Attwood The University of Manchester United Kingdom Bioinformatics A few times a year teresa.k.attwood@manchester.ac.uk GOBLET – Global Organisation for Bioinformatics Learning, Education & Training protein sequence analysis, protein family characterisation, protein function annotation, introductory bioinformatics 4 schools https://www.research.manchester.ac.uk/portal/en/researchers/terri-attwood(7df29450-9ecd-4f4d-9e77-32f25f255d97)/publications.html
Edgar Mount Sinai USA Biochemistry, Bioinformatics, Biology mathematics/statistics, Cell biology, DNA Sequencing, Ecology, General Life Sciences, Genomics, Marine biology, Metabolomics, Microbiology, Molecular biology, Proteomics, Scientific writing A few times a year eegonzalezk@gmail.com Bioinformatics, Immunology, Biology https://eegk.github.io/
Samuel Seaver Argonne National Laboratory USA Biochemistry, Bioinformatics, Biology mathematics/statistics, Plant biology Once a year or less @samseaver ASPB – American Society of Plant Biology
Molly Phillips University of Florida USA Bioinformatics, Ecology, Marine biology, Plant biology Once a month or more mphillips@flmnh.ufl.edu iDigBio biodiversity, digitization data, natural history collections, biology, K-12, undergraduate, ecology https://www.idigbio.org/
Clint Valentine TwinStrand Biosciences USA Bioinformatics, DNA Sequencing, Genomics Once a year or less valentine.clint@gmail.com EMGS – Environmental Mutagenesis & Genomics Society Python, DNA Sequencing, Reproducible Bioinformatics Analysis https://github.com/clintval
Sateesh Peri University of Nevada, Reno USA Bioinformatics, Cell biology, Molecular biology A few times a year perisateesh@nevada.unr.edu The Carpentries – Software, Data, Library Carpentry, CyVerse
Ahmed Moustafa American University in Cairo Egypt Bioinformatics, Biology mathematics/statistics, Genomics A few times a year amoustafa@aucegypt.edu ASM – American Soceity for Microbiology, The Carpentries – Software, Data, Library Carpentry, ISCB – International Society for Computational Biology Bioinformatics, Systems Biology, Population Genetics, Evolution
Denise Carvalho-Silva EMBL-EBI (Open Targets) United Kingdom Bioinformatics, Genomics, Health/medical sciences, Drug discovery Once a month or more @deniseome EMBL – European Molecular Biology Laboratory (and all EMBL-related projects) Ensembl genome browser, Open Targets, Genetic variation, Gene annotation https://github.com/deniseome
Tyson Swetnam University of Arizona USA Ecology, Remote Sensing A few times a year tswetnam@cyverse.org The Carpentries – Software, Data, Library Carpentry, CyVerse, NEON – National Ecological Observatory Network, NSF – National Science Foundation R, Python, Remote Sensing, GIS, Ecology, Statistics, lidar, structure from motion https://tyson-swetnam.github.io/
Moamen Elmassry Texas Tech University USA Bioinformatics, Microbiology A few times a year moamen.elmassry@gmail.com; @MoamenElmassry ASM – American Soceity for Microbiology R, Unix, RNA-seq, microbiome, visualization https://github.com/MoamenElmassry
Marcia Mednick Takara Bio USA USA Cell biology, DNA Sequencing, General Life Sciences, Microbiology, Molecular biology Once a month or more marciamednick@gmail.com
Marco Chiapello Italian National Research Council Italy Bioinformatics, DNA Sequencing, Genomics, Plant biology, Proteomics A few times a year chiapello.m@gmail.com / marpello1980 The Carpentries – Software, Data, Library Carpentry, ELIXIR R, data analysis, proteomics analysis
Naupaka Zimmerman University of San Francisco USA Bioinformatics, Biology mathematics/statistics, Ecology, Genomics A few times a year @naupakaz ASM – American Soceity for Microbiology, The Carpentries – Software, Data, Library Carpentry, ESA – Ecological society of america, NEON – National Ecological Observatory Network, NSF – National Science Foundation microbial ecology, community ecology, reproducible research http://z-lab.io/
Jeff Oliver University of Arizona USA Bioinformatics, Ecology, Evolution Once a month or more jcoliver@email.arizona.edu, @jcoliverAZ The Carpentries – Software, Data, Library Carpentry, CyVerse R, python, phyloinformatics https://jcoliver.github.io/learn-r
Sarah Stevens University of Wisconsin – Madison USA Bioinformatics, Ecology, Genomics A few times a year @microStevens The Carpentries – Software, Data, Library Carpentry http://sarahlrstevens.info
Chissa Rivaldi University of Notre Dame USA Bioinformatics, Biology mathematics/statistics, DNA Sequencing, Ecology, General Life Sciences, Population genetics A few times a year clrivaldi@gmail.com, @powerofcheez The Carpentries – Software, Data, Library Carpentry bash, python; r, anatomy, physiology, population genetics, GIS https://github.com/crivaldi
Chris Fields University of Illinois Urbana-Champgin USA Bioinformatics, DNA Sequencing, Microbiome/Metagenome, Genomics several times a year (varies) @cjfields The Carpentries – Software, Data Carpentry; BD2K; H3ABioNet – Pan African Bioinformatics network HPC, Python, R, Perl, Genomics, Epigenome, Metagenome, Microbiome https://github.com/HPCBio
Alexander Botzki VIB Belgium Bioinformatics, Cheminformatics, General Life Sciences A few times a year alexander.botzki@vib.be, @vibbioinfocore ELIXIR bash, python, docker, bioconda, protein structure analysis https://www.bits.vib.be
Bérénice Batut University of Freiburg Germany Bioinformatics, Genomics A few times a year berenice.batut@gmail.com @bebatut The Carpentries – Software, Data, Library Carpentry, ELIXIR, Galaxy, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training http://research.bebatut.fr/
Sean Davis National Cancer Institute, NIH USA Bioinformatics, Biology mathematics/statistics, Genomics, Health/medical sciences A few times a year NIH – National Institutes of Health, Cold Spring Harbor Laboratory Bioinformatics, Data Science, Cloud and Distributed Computing, Reproducible Research, Science IT, R https://seandavi.github.io/
James Taylor Johns Hopkins USA Bioinformatics, DNA Sequencing, General Life Sciences, Genomics, Molecular biology A few times a year @jxtx Galaxy, ISCB – International Society for Computational Biology, NIH – National Institutes of Health, NSF – National Science Foundation https://taylorlab.org
Ann Meyer bioinformatics.ca Canada Bioinformatics A few times a year course_info@bioinformatics.ca GOBLET – Global Organisation for Bioinformatics Learning, Education & Training https://bioinformaticsdotca.github.io/
Henk den Bakker University of Georgia USA Bioinformatics, Biology mathematics/statistics, DNA Sequencing, Genomics, Microbiology A few times a year henkcdenbakker@gmail.com ASM – American Society for Microbiology https://github.com/hcdenbakker
Mark Dunning University of Sheffield United Kingdom Bioinformatics, Genomics, Software and Data Carpentry A few times a year m.j.dunning@sheffield.ac.uk, twitter:@DrMarkDunning The carpentries-Software,Data bioinformatics,R,genomics,RNA-seq Sheffield Bioinformatics Core
Piraveen Piv Gopalasingam European Bioinformatics Institute (EMBL-EBI) United Kingdom Bioinformatics Once a month or more piv@ebi.ac.uk , @cascade21 ELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy, ISCB – International Society for Computational Biology
Niall Beard University of Manchester United Kingdom Bioinformatics Once a year or less niall.beard@manchester.ac.uk / @niall_beard The Carpentries – Software, Data, Library Carpentry, ELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training
Peter Rice Oryza Bioinformatics United Kingdom Bioinformatics, Biology mathematics/statistics, General Life Sciences, Genomics, Health/medical sciences, Molecular biology A few times a year ricepeterm@yahoo.co.uk i2b2-tranSMART Foundation
Ted Laderas Oregon Health & Science University USA Bioinformatics, Biology mathematics/statistics, Health/medical sciences A few times a year @tladeras
Jonathan Cummings School for Marine Science and Technology USA Biology mathematics/statistics, Ecology, Structured Decision Making A few times a year jonathan.cummings@gmail.com Society of Conservation Biology
Kate Hertweck Fred Hutch Cancer Research Center USA Bioinformatics, Biology mathematics/statistics, Genomics Once a month or more @k8hert, k8hertweck@gmail.com The Carpentries – Software, Data, Library Carpentry
Jarrett Byrnes University of Massachusetts Boston USA Ecology, Marine biology A few times a year jebyrnes The Carpentries – Software, Data, Library Carpentry, ESA – Ecological society of america, NSF – National Science Foundation
Mateusz Kuzak Dutch Techcentre fo Life Sciences the Netherlands Bioinformatics, Software Engineering, Data Analysis A few times a year @matkuzak mateusz.kuzak@dtls.nl the Carpentries, ELIXIR, RSE Pedagogy, R, Python, Docker, Jupyter
Chantal Huijbers Griffith University Australia Bioinformatics, Ecology Once a month or more c.huijbers@griffith.edu.au Australian Research Data Commons biodiversity modelling, data quality, ecological data science, train-the-trainer http://ecoed.org.au/
Siva Chudalayandi Iowa State University USA Bioinformatics, Plant biology A few times a year csiva@iastate.edu CyVerse, Galaxy, NSF – National Science Foundation, USDA RNAseq; Genome Assembly https://isugenomics.github.io/bioinformatics-workbook/
Patricia Palagi SIB Swiss Institute of Bioinformatics Switzerland Bioinformatics, Proteomics, Train the trainer A few times a year patricia.palagi@sib.swiss ELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational Biology Train-the-trainer, training organisation, training planning and strategy https://github.com/TrainTheTrainer/ELIXIR-EXCELERATE-TtT
Jacqueline Campbell Iowa State University USA Bioinformatics, DNA Sequencing, Genomics, Data Curation Once a year or less jdjax@iastate.edu @Campbell_JD_PhD AgBioData Data Curation, Bioinformatics, Genetics/Genomics https://www.agbiodata.org/
Mike Trizna Smithsonian Institution USA Bioinformatics, DNA Sequencing, Ecology, General Life Sciences, Genomics, Metagenomics, Data Science Once a month or more triznam@si.edu; @miketrizna The Carpentries – Software, Data, Library Carpentry Genomics, Data Science, Machine Learning https://github.com/MikeTrizna
Jenny Drnevich University of Illinois Urbana-Champaign USA Bioinformatics, Biology mathematics/statistics, DNA Sequencing, Genomics A few times a year, Once a month or more drnevich@illinois.edu The Carpentries – Software, Data, Library Carpentry, H3ABioNet – Pan African Bioinformatics network R, Linux, Cluster Computing, RNASeq, 16S
Jessica Holmes University of Illinois at Urbana – Champaign USA Bioinformatics, DNA Sequencing, Genomics, Transcriptomics, Metagenomics Once a month or more jholmes5@illinois.edu The Carpentries – Software, Data, Library Carpentry, H3ABioNet – Pan African Bioinformatics network, ISCB – International Society for Computational Biology, BD2K Bash, R, RNA-Seq, microbial profiling, genome browsers, git, genome assembly
Gabriella Rustici University of Cambridge United Kingdom Bioinformatics, Biology mathematics/statistics, Genomics, Health/medical sciences, Metabolomics, Proteomics, Imaging Once a month or more gr231@cam.ac.uk The Carpentries – Software, Data, Library Carpentry, ELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational Biology, Health Data Research UK bioinformatics; biology; data science; training development; training infrastructure https:/training.csx.cam.ac.uk/bioinformatics/Event-timetable
Scott Cain Ontario Institute for Cancer Research USA Bioinformatics, Genomics A few times a year scott@scottcain.net GMOD JBrowse,Chado,Tripal http://gmod.org/wiki/User:Scott
Robert Waterhouse University of Lausanne Switzerland Bioinformatics, Genomics A few times a year robert.waterhouse@gmail.com @rmwaterhouse biocuration, gene annotation https://rmwaterhouse.org/profile
Jeff Pummill University of Arkansas USA Bioinformatics, DNA Sequencing, Genomics, scientific computing resources and best practices A few times a year jpummil@uark.edu The Carpentries – Software, Data, Library Carpentry, NSF – National Science Foundation nanopore assembly hpc
Joseph Weaver North Carolina State University USA Bioinformatics, DNA Sequencing, Ecology, Genomics, Microbiology, Microscopy, Environmental Biotechnology A few times a year jeweave4@ncsu.edu @Joe_E_Weaver NSF – National Science Foundation, US Department of Education – GAANN bioinformatics, data visualization, data science https://github.com/joeweaver/get_to_know_phyloseq
Eduardo Rodríguez-Román Venezuelan Institute for Scientific Research Venezuela Bioinformatics, DNA Sequencing, General Life Sciences, Microbiology, Molecular biology, Virology A few times a year erodriguezroman@gmail.com ASM – American Soceity for Microbiology, Galaxy, eLIFE Community, American Society for Virology Virology, Molecular Epidemiology, Virus Evolution
Candace Savonen Alex’s Lemonade Stand Foundation USA Bioinformatics A few times a year cansav09@gmail.com ISCB – International Society for Computational Biology gene expression, single-cell, RNA-seq https://github.com/alexslemonade
Philipp Bayer University of Western Australia Australia Bioinformatics, Genomics A few times a year philipp.bayer@uwa.edu.au @philippbayer ABACBS – Australian Bioinformatics and Computational Biology Society, The Carpentries – Software, Data, Library Carpentry, EMBL-ABR bioinformatics,genomics,R/tidyverse,Python,bash,SQL,git
Boas Pucker Center for Biotechnology (CeBiTec), Bielefeld University Germany Bioinformatics, DNA Sequencing, Genomics, Molecular biology, Plant biology, Scientific writing A few times a year @boas_pucker CyVerse, DFG – German Research Foundation genomics, Python, applied bioinformatics, RNA-Seq analysis, genetic engineering, iGEM, plant biology, sequencing https://www.cebitec.uni-bielefeld.de/~bpucker
Arindam Basu University of Canterbury New Zealand Genomics, Health/medical sciences, Scientific writing A few times a year @arinbasu The Carpentries – Software, Data, Library Carpentry, CyVerse data analysis, R, Jupyter notebooks, https://www.canterbury.ac.nz/education/contact-us/people/arindam-basu.html
Robert Haase MPI-CBG Germany Bioinformatics, Biology mathematics/statistics, Image Analysis Once a month or more @haesleinhuepf NEUBIAS Image Analysis, Smart Microscopy, Software Engineering, GPU-acceleration https://github.com/haesleinhuepf
Lilach Sheiner University of Glasgow United Kingdom Biochemistry, Cell biology, Microbiology, Molecular biology, parasitology Once a year or less @SheinerLab ASM – American Soceity for Microbiology, Wellcome trust, Gates foundation, Burrough Wellcome fund Parasite biology, molecular biology http://lilachsheiner.wixsite.com/sheinerlab-wtcmp
David Armstrong PDBe (EMBL-EBI) United Kingdom Biochemistry, Bioinformatics, Structural Biology A few times a year davida@ebi.ac.uk, @daveasci ELIXIR, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects) Structural biology, protein structure, biochemistry, proteins, structure prediction, NMR. https://www.ebi.ac.uk/about/people/david-armstrong
Walid Gharib Swiss Institute of Bioinformatics Switzerland Bioinformatics, Biology mathematics/statistics, DNA Sequencing, Genomics A few times a year ELIXIR
Shishir Pant Helainki University Finland Cell biology, Molecular biology, Scientific writing Once a year or less shishir.pant64@gmail.com Cancer biology, scientific writing https://chasingcancer.com/
Ronnie de Jonge Utrecht University The Netherlands Bioinformatics, DNA Sequencing, Genomics, Microbiology A few times a year r.dejonge@uu.nl Microbial genomics, genome (re)sequencing, genome annotation
Brian Repko Previously Novartis Institutes for Biomedical Research USA Bioinformatics, Cell biology, DNA Sequencing, General Life Sciences, Genomics, Health/medical sciences, Metabolomics, Molecular biology, Proteomics Once a year or less brian.repko@gmail.com GA4GH, BigDataGenomics drug discovery, basic molecular biology https://github.com/brianrepko
Nirav Merchant University of Arizona USA Bioinformatics, Cloud/Computational Infrastructure A few times a year nirav@email.arizona.edu The Carpentries – Software, Data, Library Carpentry, CyVerse, ISCB – International Society for Computational Biology, NIH – National Institutes of Health, NEON – National Ecological Observatory Network, NSF – National Science Foundation cloud scalability data-management http://www.cyverse.org
Osvaldo Reis Junior Unicamp Brazil Bioinformatics A few times a year osvaldor@unicamp.br LaCTAD – Central Laboratory of High Throughput Technologies in Life Science
Amber Leckenby University of Bradford United Kingdom Biochemistry, Bioinformatics, Cell biology, DNA Sequencing, General Life Sciences, Genomics, Metabolomics, Molecular biology A few times a year @amberleckenby Data carpentry unix, genome assesmbly, metagenomics, microbiome, R stats
Jeanette McCarthy Precision Medicine Advisors, Duke University, UCSF USA Genomics, Health/medical sciences A few times a year jeanette@pmedadvisors.com precision medicine, pharmacogenomics, genetic testing https://www.precisionmedicineadvisors.com/
Jasleen Grewal University of British Columbia Canada Bioinformatics, Genomics, Molecular biology A few times a year Genome Canada, ISCB – International Society for Computational Biology genetics;machine-learning;coding https://jasgrewal.github.io/tutorials/
Joanna Kelley Washington State University USA Bioinformatics, DNA Sequencing, Genomics Once a year or less joanna.l.kelley@wsu.edu, @joannalkelley NSF – National Science Foundation genomics, transcriptomics, bioinformatics https://labs.wsu.edu/genomes
Gabriela Chavez Auburn University, Department of Biological Sciences USA Biochemistry, Cell biology, Health/medical sciences, Molecular biology A few times a year gabriela.chavez@auburn.edu ASM – American Soceity for Microbiology Virology, RNA viruses, emerging viruses, virus evolution https://github.com/gabrielachavez2019
Laurent Gatto UCLouvain, de Duve Institute Belgium Bioinformatics, Genomics, Proteomics, Reproducible research A few times a year @lgatt0 The Carpentries – Software, Data, Library Carpentry R, git https://lgatto.github.io/
Lucia Cottone University College London United kingdom Cell biology, Molecular biology Once a year or less l.cottone@ucl.ac.uk Cancer, epigenetic
Alina Freire-Fierro Universida Tecnica de Cotopaxi Ecuador General Life Sciences, Plant biology Once a year or less Alina.ff@gmail.com IAPT-International Society of Plant Taxonomy General Botany, Neitropical Floristics, Collections Management in Herbaria
Mark Crowe QCIF Australia Bioinformatics, Biology mathematics/statistics, Genomics A few times a year mark.crowe@qcif.edu.au @marklcrowe The Carpentries – Software, Data, Library Carpentry, EMBL – European Molecular Biology Laboratory (and all EMBL-related projects), Galaxy Genomics, Galaxy, R
Adrien Melquiond University Medical Center Utrecht / Utrecht University / Utrecht Bioinformatics Center The Netherlands Bioinformatics, Biology mathematics/statistics, Genomics, Molecular Modelling A few times a year https://twitter.com/AMelquiond The Carpentries – Software, Data, Library Carpentry, ELIXIR, ISCB – International Society for Computational Biology R, Python, Bioinformatics, Molecular Modelling, Molecular Dynamics, Molecular Docking, Biostatistics https://www.uu.nl/staff/ASJMelquiond
Peter McQuilton University of Oxford United Kingdom Bioinformatics, General Life Sciences A few times a year @drosophilic ELIXIR, International Society of Biocurators, RDA, GO-FAIR… Standards, FAIR data, Research Data Management
Dayana E. Salas-Leiva Dalhousie University Canada Bioinformatics, DNA Sequencing, Genomics, Microbiology Once a year or less
Igor Dolgalev New York University School of Medicine USA Bioinformatics, DNA Sequencing, Genomics A few times a year igor.dolgalev@nyumc.org
MD Sharma University of Exeter United Kingdom Bioinformatics, DNA Sequencing, General Life Sciences, Genomics, Metabolomics, Microscopy, Molecular biology Once a year or less m.d.sharma@exeter.ac.uk The Carpentries – Software, Data, Library Carpentry hpc,Linux, Informatics
Emma Rand University of York, UK United Kingdom Bioinformatics, Biology mathematics/statistics, Metabolomics, Proteomics A few times a year emma.rand@york.ac.uk @er13_r Royal Society of Biology, the Biochemical Society data analysis, data visualisation, R, Python, reproducibility, Teaching and learning https://www.york.ac.uk/biology/our-staff/emma-rand/
Pamela Shaw Northwestern University Feinberg School of Medicine USA Bioinformatics, General data management concepts A few times a year p-shaw2@northwestern.edu The Carpentries – Software, Data, Library Carpentry, ISCB – International Society for Computational Biology genome browsers, command line https://github.com/galterdatalab
Michelle Jones Cedars-Sinai Medical Center US Bioinformatics, Genomics Once a year or less Michelle.jones@csmc.edu Genetic Epidemiology, Genomics, Genetics
Daniel Blankenberg Lerner Research Institute, Cleveland Clinic USA Bioinformatics, DNA Sequencing, General Life Sciences, Genomics, Molecular biology A few times a year @DBlankenberg Galaxy, ISCB – International Society for Computational Biology, NIH – National Institutes of Health http://blankenberglab.org/
Lok Raj Joshi South Dakota State University USA DNA Sequencing, Genomics, Microbiology, Molecular biology, Virology lokraj2003@hotmail.com R programming, Viral Bioinformatics, Virology, Molecular Biology http://www.lokspage.netlify.com
Pamela Shaw Northwestern University Feinberg School of Medicine USA Bioinformatics, Scientific writing, NIH Public Access Compliance Once a month or more p-shaw2@northwestern.edu The Carpentries – Software, Data, Library Carpentry, ISCB – International Society for Computational Biology, NIH – National Institutes of Health genome browsers, bioinformatics (general), basic command line https://galterdatalab.github.io/
Dipankar Dutta National Institutes of Health USA Biology mathematics/statistics, Neuroscience, Data Science for Life Sciences Once a month or more dipankardutta@scientificcitizen.org; @duttajdip NIH – National Institutes of Health, SFN – Society for Neuroscience Data Science for Life Sciences https://scientificcitizen.org
Noushin Ghaffari Genomics and Bioinformatics, Texas A&M AgriLife Research Research Scientist, Texas A&M High Performance Research Computing USA Bioinformatics, Biology mathematics/statistics, DNA Sequencing, General Life Sciences, Genomics, Plant biology Once a month or more nghaffari@tamu.edu The Carpentries – Software, Data, Library Carpentry Genome assembly, metagenmics, statistical analysis, computational biology https://www.linkedin.com/in/noushin-ghaffari-a8197133
Nathan Medd University of Edinburgh United Kingdom Bioinformatics, Ecology, Entomology Once a month or more nathan.medd@ed.ac.uk The Carpentries – Software, Data, Library Carpentry, ELIXIR bioinformatics, R, Linux, Genome Assembely, Metagenomics, RNA-seq, Entomology, Ecology http://genomics.ed.ac.uk/services/training
Alana Alexander University of Otago New Zealand Bioinformatics, Genomics A few times a year alana.alexander@otago.ac.nz, @laninsky The Carpentries – Software, Data, Library Carpentry Molecular ecology, R, genomics https://gemmell-lab.otago.ac.nz/our-team/19-team/research-and-postdoctoral-research-fellows/138-dr-alana-alexander
Jill Wegrzyn University of Connecticut USA Bioinformatics, Biology mathematics/statistics, DNA Sequencing, General Life Sciences, Genomics, Molecular biology, Plant biology, Scientific writing A few times a year jill.wegrzyn@uconn.edu @JillWegrzyn Galaxy, ISCB – International Society for Computational Biology, NEON – National Ecological Observatory Network, NSF – National Science Foundation, USDA bioinformatics, plant genomics, genome annotation http://plantcompgenomics.com
Ana Panigassi Self employed Ireland Health/medical sciences, Scientific writing A few times a year @ana_panigassi Clinical mentor, science communication https://anapanigassi.wixsite.com/anapanigassi
Alexander Pico Gladstone Institutes USA Bioinformatics, Network biology A few times a year alex.pico@gladstone.ucsf.edu ELIXIR, GOBLET – Global Organisation for Bioinformatics Learning, Education & Training, ISCB – International Society for Computational Biology, NIH – National Institutes of Health network biology, cytoscape http://tutorials.cytoscape.org
Manuel Corpas Cambridge Precision Medicine United Kingdom Clinical Genomics, Bioinformatics, Next Generation Sequencing, Precision Medicine A few times a year @manuelcorpas Clinical Genomics, Bioinformatics, Next Generation Sequencing, Precision Medicine
Rebecca Batorsky Tufts University USA R, python, HPC, Linux, Bioinformatics A few times a year rebecca.batorsky@tufts.edu R, python, HPC, Linux, Bioinformatics
Geraldine Van der Auwera Broad Institution USA Genomics, Variant discovery analysis, Pipelining, Jupyter notebooks, Cloud computing for scientists A few times a year @VdaGeraldine Genomics, Variant discovery analysis, Pipelining, Jupyter notebooks, Cloud computing for scientists
April Clyburne-Sherin Code Ocean USA Reproducibility (computational and empirical), data management, open data and code, R, literate programming (Jupyter Notebooks and RMarkdown), curriculum development, and instructor training. A few times a year @april_cs OpenCon, Reproducibility 4 Everyone Collaboration, Mozilla Mentors, Carpentries, WholeTale Education Working Group, Reproducibility Ambassador Program, AllTrials Reproducibility (computational and empirical), data management, open data and code, R, literate programming (Jupyter Notebooks and RMarkdown), curriculum development, and instructor training.
Ana Paula Panigassi Self employed Ireland Clinical Mentoring A few times a year Clinical Mentoring https://anapanigassi.wixsite.com/anapanigassi
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